Latest Publications (out of 218 papers)

• 218. Skliros A, Jernigan RL, Kloczkowski "A Models Defining the Motions of Protein Loops". Submitted


• 217. Kurkcuoglu O, Turgut OT, Cansu S, Jernigan RL, and Pemra Doruker P "Focused Functional Dynamics of Supramolecules by Use of a Mixed-Resolution Elastic Network Model". Biophys J, in press


• 216. Feng C, Mukhopadhyay K, Young W-B, Jernigan RL, Wu Z "Refinement of under-determined loops of human prion protein by database-derived distance constraints". Int J Data Mining and Bioinformatics, in press.


• 215. Feng Y, Kloczkowski A, Jernigan RL " The energy profiles of atomic conformational transition intermediates of adenylate kinase. ", Proteins, 2009 Apr 28. [Epub ahead of print]


• 214. Yang, L, Song G, Jernigan RL "Protein elastic network models and the ranges of cooperativity". Proc Natl Acad Sci USA, 2009 Jul 14. [Epub ahead of print]


• 213. Schuyler, AD, Jernigan RL, Qasba PK, Ramakrishnan B, Chirikjian GS "Iterative cluster-NMA (icNMA): A tool for generating conformational transitions in proteins" Proteins 2009, 74, 760-776.


• 212. Kloczkowski A, Jernigan RL, Wu Z, Song G, Yang L, Kolinski A, Pokarowski P " Distance matrix-based approach to protein structure prediction". J Struct Funct Genomics, 2009;10:67-81.


• 211. Peto M, Kloczkowski A, Honavar V, Jernigan RL " Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable". BMC Bioinformatics 2008;9:487.


• 210. Kurkcuoglu O, Kurkcuoglu Z, Doruker P, Jernigan RL, "Collective dynamics of the ribosomal tunnel revealed by elastic network modeling.". Proteins 2009;75(4)::837-845.


• 209. Kurcuoglu O, Doruker P, Sen TZ, Kloczkowski A, Jernigan RL "The ribosome controls and directs mRNA entry, translocation and exit dynamics" Phys Biol, 2008;5,46005


• 208. Yang, L, Song G, Jernigan RL "Comparisons of experimental and computed protein anisotropic temperature factors. ". Biophys J 2009; 76:164-175.


• 207. Yan A, Wang Y, Kloczkowski A, Jernigan RL "Effects of protein subunits removal on the computed motions of partial 30S structures of the ribosome" J. Chem. Thy. Comput 2008;4,1757-1767.


• 206. Cui, F, Jernigan, R, Wu, Z " Knowledge-based versus experimentally acquired distance and angle constraints for NMR structure refinement. ". J Bioinform Comput Biol 2008;6:283-300.


• 205. Feng, Y, Jernigan, RL, Kloczkowski, A. " Orientational distributions of contact clusters in proteins closely resemble those of an icosahedron. ". Proteins 2008;73:730-741.


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